Source: t-coffee
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>,
           Charles Plessy <plessy@debian.org>,
           Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 9),
               gfortran
Standards-Version: 3.9.5
Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/t-coffee/trunk/
Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/t-coffee/trunk/
Homepage: http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html

Package: t-coffee
Architecture: any
Depends: ${shlibs:Depends},
         ${misc:Depends}
Recommends: libsoap-lite-perl,
            libxml-simple-perl,
            tm-align
Suggests: boxshade,
          seaview,
          t-coffee-examples,
          dialign-tx,
          kalign,
          mafft,
          muscle,
          poa,
          probcons,
          clustalw,
          amap-align,
          proda
Description: Multiple Sequence Alignment
 T-Coffee is a multiple sequence alignment package. Given a set of
 sequences (Proteins or DNA), T-Coffee generates a multiple sequence
 alignment. Version 2.00 and higher can mix sequences and structures.
 .
 T-Coffee allows the combination of a collection of multiple/pairwise,
 global or local alignments into a single model. It can also
 estimate the level of consistency of each position within the new
 alignment with the rest of the alignments. See the pre-print for more
 information
 .
 T-Coffee has a special called M-Coffee that makes it possible to combine the
 output of many multiple sequence alignment packages. In its published version,
 it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and
 T-Coffee.  A special version has been made for Debian, DM-Coffee, that uses
 only free software by replacing Clustal W by Kalign. Using the 8 Methods of
 M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite
 methods if you prefer.

Package: t-coffee-examples
Architecture: all
Depends: ${misc:Depends}
Recommends: t-coffee
Description: annotated examples for the use of T-Coffee
 To help increasing the proficiency in the use of T-Coffee, this
 package provides examples for input sequences and their proper
 alignment.
