minimap2 (2.27+dfsg-1) unstable; urgency=medium

  * Team upload.
  * d/rules, d/clean: simply cleanup code.
  * d/rules: clean using pybuild. Closes: #1046060

 -- Michael R. Crusoe <crusoe@debian.org>  Mon, 18 Mar 2024 17:12:17 +0100

minimap2 (2.26+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Standards-Version: 4.6.2 (routine-update)
  * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
  * d/control: specify gnuplot-nox build-dep option first for consistency.
  * d/patches: forward some patches, update metadata

 -- Michael R. Crusoe <crusoe@debian.org>  Thu, 29 Feb 2024 15:44:29 +0100

minimap2 (2.24+dfsg-3) unstable; urgency=medium

  * Fix watch file
  * Standards-Version: 4.6.1 (routine-update)
  * Update lintian override info format in d/python3-mappy.lintian-overrides on
    line 2.

 -- Andreas Tille <tille@debian.org>  Wed, 30 Nov 2022 20:52:21 +0100

minimap2 (2.24+dfsg-2) unstable; urgency=medium

  * Team Upload.
  * Re-enable and adapt older simde patch to
    import properly on !x86 and !arm64 (Closes: #1004455)
  * d/t/control: Add superficial import test for mappy

 -- Nilesh Patra <nilesh@debian.org>  Sat, 12 Mar 2022 14:43:04 +0530

minimap2 (2.24+dfsg-1) unstable; urgency=medium

  * New upstream version

 -- Andreas Tille <tille@debian.org>  Thu, 17 Feb 2022 15:33:57 +0100

minimap2 (2.22+dfsg-3) unstable; urgency=medium

  * Team upload
  * Add SIMDe bits to python-sse4-arch.patch ; adjust SIMDe patch.
    Closes: #998015

 -- Michael R. Crusoe <crusoe@debian.org>  Sun, 07 Nov 2021 19:23:30 +0100

minimap2 (2.22+dfsg-2) unstable; urgency=medium

  * Team upload
  * Fix non-x86 build.
  * mark do_not_use_natbib.bst.patch as not needing forwarding
  * Revive SIMDe patch
  * debian/copyright: exclude sse2neon in favor of libsimde-dev

 -- Michael R. Crusoe <crusoe@debian.org>  Sun, 07 Nov 2021 17:06:42 +0100

minimap2 (2.22+dfsg-1) unstable; urgency=medium

  * Team upload

  [ Andreas Tille ]
  * Fix watchfile to detect new versions on github
  * New upstream version
  * Standards-Version: 4.6.0 (routine-update)
  * Use sensible file name for uscan downloads

  [ Michael R. Crusoe ]
  * Refresh patches, dropping simde
  * Add setuptools as a build-dep

 -- Michael R. Crusoe <crusoe@debian.org>  Thu, 14 Oct 2021 12:59:39 +0200

minimap2 (2.17+dfsg-12) unstable; urgency=medium

  [ Michael Hudson-Doyle ]
  * d/patches/python-sse4-arch.patch: Only pass -msse4.1 to the compiler on
    amd64.
    Closes: #969596

 -- Andreas Tille <tille@debian.org>  Tue, 15 Sep 2020 10:54:02 +0200

minimap2 (2.17+dfsg-11) unstable; urgency=medium

  * Add lintian-override
  * Manpage for minimap2.py

 -- Andreas Tille <tille@debian.org>  Tue, 07 Jul 2020 11:32:26 +0200

minimap2 (2.17+dfsg-10) unstable; urgency=medium

  * Provide Python3 interface
  * debhelper-compat 13 (routine-update)

 -- Andreas Tille <tille@debian.org>  Tue, 23 Jun 2020 21:40:16 +0200

minimap2 (2.17+dfsg-9) unstable; urgency=medium

  * Team upload.
  * Use the libsimde-dev package instead of the code copy

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sun, 19 Apr 2020 14:49:51 +0200

minimap2 (2.17+dfsg-8) unstable; urgency=medium

  * Team upload.
  * Delete addLTO.patch
    Closes: #956136

 -- Hamid Nassiby <h.nassiby@gmail.com>  Mon, 13 Apr 2020 08:18:05 +0200

minimap2 (2.17+dfsg-7) unstable; urgency=medium

  * Merge changelog entries of several never released package versions
  * Add salsa-ci file (routine-update)
  * Trim trailing whitespace.
  * Set upstream metadata fields: Repository, Repository-Browse.
  * Add missing DEP3 fields

 -- Andreas Tille <tille@debian.org>  Wed, 25 Mar 2020 15:17:28 +0100

minimap2 (2.17+dfsg-6) unstable; urgency=medium

  * Team upload
  * Created -dev package
  * Standards-Version: 4.5.0
  * Added Link-Time-Optimization
  * Added include files
  * d/control: Added Rules-Requires-Root flag
  * Manually invoking ranlib
  * In reaction to the FTPmaster's rejection notice
    - added copyright referenced in .tex
    - added current copyright holder (Dana Farber Institute)

 -- Steffen Moeller <moeller@debian.org>  Sun, 22 Mar 2020 00:52:34 +0100

minimap2 (2.17+dfsg-2) unstable; urgency=medium

  [ Michael R. Crusoe ]
  * Team upload.
  * Add support for more architectures using the SIMD Everyhere library
    Closes: #922620
  * Standards-Version: 4.4.1

  [ Andreas Tille ]
  * Set upstream metadata fields: Bug-Database, Bug-Submit.

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sun, 12 Jan 2020 18:22:11 +0100

minimap2 (2.17+dfsg-1) unstable; urgency=medium

  * New upstream version
  * debhelper-compat 12
  * Standards-Version: 4.4.0

 -- Andreas Tille <tille@debian.org>  Thu, 01 Aug 2019 15:23:40 +0200

minimap2 (2.15+dfsg-2) unstable; urgency=medium

  * Team upload.
  * Fix FTBFS on armhf and arm64: pass relevant variable to make.
    Closes: #929275

 -- Helmut Grohne <helmut@subdivi.de>  Mon, 20 May 2019 17:26:01 +0200

minimap2 (2.15+dfsg-1) unstable; urgency=medium

  * New upstream version
  * debhelper 12
  * Standards-Version: 4.3.0

 -- Andreas Tille <tille@debian.org>  Fri, 11 Jan 2019 22:40:39 +0100

minimap2 (2.14+dfsg-1) unstable; urgency=low

  * Initial packaging (Closes: #906332)

 -- Andreas Tille <tille@debian.org>  Fri, 09 Nov 2018 23:36:05 +0100
